Identification and functional analysis of the NLP-encoding genes from the phytopathogenic oomycete Phytophthora capsici.
Identifieur interne : 000746 ( Main/Exploration ); précédent : 000745; suivant : 000747Identification and functional analysis of the NLP-encoding genes from the phytopathogenic oomycete Phytophthora capsici.
Auteurs : Xiao-Ren Chen [République populaire de Chine] ; Shen-Xin Huang [République populaire de Chine] ; Ye Zhang [République populaire de Chine] ; Gui-Lin Sheng [République populaire de Chine] ; Yan-Peng Li [République populaire de Chine] ; Feng Zhu [République populaire de Chine]Source :
- Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Peptides, Phytophthora.
- Famille multigénique, Génome, Phylogenèse, Pseudogènes.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Peptides.
- genetics : Phytophthora.
- Genome, Multigene Family, Phylogeny, Pseudogenes.
Abstract
Phytophthora capsici is a hemibiotrophic, phytopathogenic oomycete that infects a wide range of crops, resulting in significant economic losses worldwide. By means of a diverse arsenal of secreted effector proteins, hemibiotrophic pathogens may manipulate plant cell death to establish a successful infection and colonization. In this study, we described the analysis of the gene family encoding necrosis- and ethylene-inducing peptide 1 (Nep1)-like proteins (NLPs) in P. capsici, and identified 39 real NLP genes and 26 NLP pseudogenes. Out of the 65 predicted NLP genes, 48 occur in groups with two or more genes, whereas the remainder appears to be singletons distributed randomly among the genome. Phylogenetic analysis of the 39 real NLPs delineated three groups. Key residues/motif important for the effector activities are degenerated in most NLPs, including the nlp24 peptide consisting of the conserved region I (11-aa immunogenic part) and conserved region II (the heptapeptide GHRHDWE motif) that is important for phytotoxic activity. Transcriptional profiling of eight selected NLP genes indicated that they were differentially expressed during the developmental and plant infection phases of P. capsici. Functional analysis of ten cloned NLPs demonstrated that Pc11951, Pc107869, Pc109174 and Pc118548 were capable of inducing cell death in the Solanaceae, including Nicotiana benthamiana and hot pepper. This study provides an overview of the P. capsici NLP gene family, laying a foundation for further elucidating the pathogenicity mechanism of this devastating pathogen.
DOI: 10.1007/s00438-018-1432-7
PubMed: 29572661
Affiliations:
Links toward previous steps (curation, corpus...)
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xrchen@yzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Shen Xin" sort="Huang, Shen Xin" uniqKey="Huang S" first="Shen-Xin" last="Huang">Shen-Xin Huang</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Ye" sort="Zhang, Ye" uniqKey="Zhang Y" first="Ye" last="Zhang">Ye Zhang</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Sheng, Gui Lin" sort="Sheng, Gui Lin" uniqKey="Sheng G" first="Gui-Lin" last="Sheng">Gui-Lin Sheng</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Li, Yan Peng" sort="Li, Yan Peng" uniqKey="Li Y" first="Yan-Peng" last="Li">Yan-Peng Li</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Feng" sort="Zhu, Feng" uniqKey="Zhu F" first="Feng" last="Zhu">Feng Zhu</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecular genetics and genomics : MGG</title><idno type="eISSN">1617-4623</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genome (MeSH)</term><term>Multigene Family (MeSH)</term><term>Peptides (genetics)</term><term>Phylogeny (MeSH)</term><term>Phytophthora (genetics)</term><term>Pseudogenes (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Famille multigénique (MeSH)</term><term>Génome (MeSH)</term><term>Peptides (génétique)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora (génétique)</term><term>Pseudogènes (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Peptides</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Peptides</term><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genome</term><term>Multigene Family</term><term>Phylogeny</term><term>Pseudogenes</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Famille multigénique</term><term>Génome</term><term>Phylogenèse</term><term>Pseudogènes</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora capsici is a hemibiotrophic, phytopathogenic oomycete that infects a wide range of crops, resulting in significant economic losses worldwide. By means of a diverse arsenal of secreted effector proteins, hemibiotrophic pathogens may manipulate plant cell death to establish a successful infection and colonization. In this study, we described the analysis of the gene family encoding necrosis- and ethylene-inducing peptide 1 (Nep1)-like proteins (NLPs) in P. capsici, and identified 39 real NLP genes and 26 NLP pseudogenes. Out of the 65 predicted NLP genes, 48 occur in groups with two or more genes, whereas the remainder appears to be singletons distributed randomly among the genome. Phylogenetic analysis of the 39 real NLPs delineated three groups. Key residues/motif important for the effector activities are degenerated in most NLPs, including the nlp24 peptide consisting of the conserved region I (11-aa immunogenic part) and conserved region II (the heptapeptide GHRHDWE motif) that is important for phytotoxic activity. Transcriptional profiling of eight selected NLP genes indicated that they were differentially expressed during the developmental and plant infection phases of P. capsici. Functional analysis of ten cloned NLPs demonstrated that Pc11951, Pc107869, Pc109174 and Pc118548 were capable of inducing cell death in the Solanaceae, including Nicotiana benthamiana and hot pepper. This study provides an overview of the P. capsici NLP gene family, laying a foundation for further elucidating the pathogenicity mechanism of this devastating pathogen.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29572661</PMID><DateCompleted><Year>2018</Year><Month>07</Month><Day>10</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>14</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1617-4623</ISSN><JournalIssue CitedMedium="Internet"><Volume>293</Volume><Issue>4</Issue><PubDate><Year>2018</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Molecular genetics and genomics : MGG</Title><ISOAbbreviation>Mol Genet Genomics</ISOAbbreviation></Journal><ArticleTitle>Identification and functional analysis of the NLP-encoding genes from the phytopathogenic oomycete Phytophthora capsici.</ArticleTitle><Pagination><MedlinePgn>931-943</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00438-018-1432-7</ELocationID><Abstract><AbstractText>Phytophthora capsici is a hemibiotrophic, phytopathogenic oomycete that infects a wide range of crops, resulting in significant economic losses worldwide. By means of a diverse arsenal of secreted effector proteins, hemibiotrophic pathogens may manipulate plant cell death to establish a successful infection and colonization. In this study, we described the analysis of the gene family encoding necrosis- and ethylene-inducing peptide 1 (Nep1)-like proteins (NLPs) in P. capsici, and identified 39 real NLP genes and 26 NLP pseudogenes. Out of the 65 predicted NLP genes, 48 occur in groups with two or more genes, whereas the remainder appears to be singletons distributed randomly among the genome. Phylogenetic analysis of the 39 real NLPs delineated three groups. Key residues/motif important for the effector activities are degenerated in most NLPs, including the nlp24 peptide consisting of the conserved region I (11-aa immunogenic part) and conserved region II (the heptapeptide GHRHDWE motif) that is important for phytotoxic activity. Transcriptional profiling of eight selected NLP genes indicated that they were differentially expressed during the developmental and plant infection phases of P. capsici. Functional analysis of ten cloned NLPs demonstrated that Pc11951, Pc107869, Pc109174 and Pc118548 were capable of inducing cell death in the Solanaceae, including Nicotiana benthamiana and hot pepper. This study provides an overview of the P. capsici NLP gene family, laying a foundation for further elucidating the pathogenicity mechanism of this devastating pathogen.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Xiao-Ren</ForeName><Initials>XR</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-2395-0562</Identifier><AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China. xrchen@yzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Shen-Xin</ForeName><Initials>SX</Initials><AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Ye</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sheng</LastName><ForeName>Gui-Lin</ForeName><Initials>GL</Initials><AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yan-Peng</ForeName><Initials>YP</Initials><AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Feng</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, No. 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>31671971</GrantID><Agency>the National Natural Science Foundation of China</Agency><Country></Country></Grant><Grant><GrantID>YZ2016121</GrantID><Agency>Natural Science Foundation of Yangzhou City (China)</Agency><Country></Country></Grant><Grant><GrantID>201303018</GrantID><Agency>the Special Fund for Agro-Scientific Research in the Public Interest of China</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>03</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mol Genet Genomics</MedlineTA><NlmUniqueID>101093320</NlmUniqueID><ISSNLinking>1617-4623</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010455">Peptides</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D016678" MajorTopicYN="Y">Genome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="Y">Multigene Family</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010455" MajorTopicYN="N">Peptides</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011544" MajorTopicYN="Y">Pseudogenes</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Agroinfiltration</Keyword><Keyword MajorTopicYN="N">NLP</Keyword><Keyword MajorTopicYN="N">Necrosis</Keyword><Keyword MajorTopicYN="N">Nlp24</Keyword><Keyword MajorTopicYN="N">Phytophthora capsici</Keyword><Keyword MajorTopicYN="N">Transcriptional pattern</Keyword><Keyword MajorTopicYN="N">Virulence</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>01</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>03</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>3</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>7</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Chen, Xiao Ren" sort="Chen, Xiao Ren" uniqKey="Chen X" first="Xiao-Ren" last="Chen">Xiao-Ren Chen</name></noRegion><name sortKey="Huang, Shen Xin" sort="Huang, Shen Xin" uniqKey="Huang S" first="Shen-Xin" last="Huang">Shen-Xin Huang</name><name sortKey="Li, Yan Peng" sort="Li, Yan Peng" uniqKey="Li Y" first="Yan-Peng" last="Li">Yan-Peng Li</name><name sortKey="Sheng, Gui Lin" sort="Sheng, Gui Lin" uniqKey="Sheng G" first="Gui-Lin" last="Sheng">Gui-Lin Sheng</name><name sortKey="Zhang, Ye" sort="Zhang, Ye" uniqKey="Zhang Y" first="Ye" last="Zhang">Ye Zhang</name><name sortKey="Zhu, Feng" sort="Zhu, Feng" uniqKey="Zhu F" first="Feng" last="Zhu">Feng Zhu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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